Biopython Tutorial for Bioinformatics | Count features in a Genbank file using Python

This tutorial shows you how to read a genbank file and count the number of sequence features using the python bioinformatics package, biopython.


Notebook can be found here: https://github.com/vappiah/Python-Bioinformatics-Hacks
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Download the genbank file using this link
M48 https://www.ncbi.nlm.nih.gov/nuccore/CP030138.1



Chapters
01:08 Download the example genbank file
03:20 Import libraries
04:16:09 Set path of the genbank file
05:03 Read genbank file
05:38 Get the feature types in the read genbank file
08:18 Count the feature types
12:21 Save result to a file
16:32 View and open output file


How to read genbank files
https://youtu.be/pmYyEsRNt98

Install Python libraries using pip
https://youtu.be/Kp-O4vVhRew
https://youtu.be/oZEmnsKLvJo



Commands used

from Bio import SeqIO
SeqIO.parse
SeqIO.read
SeqIO.write


#python #bioinformaticsforbeginners #bioinformática #bioinformatics